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You searched for: EV220177 (EV-TRACK ID)
Showing 1 - 6 of 6
Showing 1 - 6 of 6
Details | EV-TRACK ID | Experiment nr. | Species | Sample type | Separation protocol | First author | Year | EV-METRIC |
---|---|---|---|---|---|---|---|---|
EV220177 | 2/6 | Homo sapiens | MDAMB231 | (d)(U)C | Pachane BC | 2022 | 78% | |
Study summaryFull title
All authors
Pachane BC, Nunes ACC, Cataldi TR, Micocci KC, Moreira BC, Labate CA, Selistre-de-Araujo HS, Altei WF
Journal
Int J Mol Sci
Abstract
Hypoxia, a condition of low oxygenation frequently found in triple-negative breast tumors (TNBC), pr (show more...)
EV-METRIC
78% (97th percentile of all experiments on the same sample type)
Reported
Not reported Not applicable EV-enriched
proteins
Protein analysis: analysis of three or more EV-enriched proteins
non
EV-enriched protein
Protein analysis: assessment of a non-EV-enriched protein
qualitative
and quantitative analysis
Particle analysis: implementation of both qualitative and quantitative methods. For the quantitative method, the reporting of measured EV concentration is expected.
electron
microscopy images
Particle analysis: inclusion of a widefield and close-up electron microscopy image
density
gradient
Separation method: density gradient, at least as validation of results attributed to EVs
EV density
Separation method: reporting of obtained EV density
ultracentrifugation specifics
Separation method: reporting of g-forces, duration and rotor type of ultracentrifugation steps
antibody
specifics
Protein analysis: antibody clone/reference number and dilution
lysate
preparation
Protein analysis: lysis buffer composition
Study dataSample type
Cell culture supernatant
Sample origin
Normoxia (20% O2)
Focus vesicles
medium extracellular vesicle
Separation protocol
Separation protocol
(Differential) (ultra)centrifugation
Protein markers
EV: Alix/ CD63/ Flotillin-1
non-EV: Calnexin Proteomics
no
Show all info
Study aim
Function/Identification of content (omics approaches)
Sample
Species
Homo sapiens
Sample Type
Cell culture supernatant
EV-producing cells
MDAMB231
EV-harvesting Medium
Serum free medium
Cell viability (%)
96
Cell count
1.50E+08
Separation Method
(Differential) (ultra)centrifugation
dUC: centrifugation steps
Below or equal to 800 g
Between 800 g and 10,000 g Between 10,000 g and 50,000 g Pelleting performed
Yes
Pelleting: rotor type
Type 45 Ti
Pelleting: speed (g)
10,000
Wash: volume per pellet (ml)
4
Wash: time (min)
30
Wash: Rotor Type
Type 45 Ti
Wash: speed (g)
10,000
Characterization: Protein analysis
Protein Concentration Method
microBCA
Protein Yield (µg)
per milliliter of starting sample
Western Blot
Not detected EV-associated proteins
Alix/ CD63/ Flotillin-1
Not detected contaminants
Calnexin
Characterization: Lipid analysis
No
Characterization: Particle analysis
NTA
Report type
Modus
Reported size (nm)
243
EV concentration
Yes
Particle yield
as number of particles per milliliter of starting sample: 5.23E+10
EM
EM-type
Transmission-EM
Image type
Close-up, Wide-field
|
||||||||
EV220177 | 3/6 | Homo sapiens | MDAMB231 | (d)(U)C | Pachane BC | 2022 | 78% | |
Study summaryFull title
All authors
Pachane BC, Nunes ACC, Cataldi TR, Micocci KC, Moreira BC, Labate CA, Selistre-de-Araujo HS, Altei WF
Journal
Int J Mol Sci
Abstract
Hypoxia, a condition of low oxygenation frequently found in triple-negative breast tumors (TNBC), pr (show more...)
EV-METRIC
78% (97th percentile of all experiments on the same sample type)
Reported
Not reported Not applicable EV-enriched
proteins
Protein analysis: analysis of three or more EV-enriched proteins
non
EV-enriched protein
Protein analysis: assessment of a non-EV-enriched protein
qualitative
and quantitative analysis
Particle analysis: implementation of both qualitative and quantitative methods. For the quantitative method, the reporting of measured EV concentration is expected.
electron
microscopy images
Particle analysis: inclusion of a widefield and close-up electron microscopy image
density
gradient
Separation method: density gradient, at least as validation of results attributed to EVs
EV density
Separation method: reporting of obtained EV density
ultracentrifugation specifics
Separation method: reporting of g-forces, duration and rotor type of ultracentrifugation steps
antibody
specifics
Protein analysis: antibody clone/reference number and dilution
lysate
preparation
Protein analysis: lysis buffer composition
Study dataSample type
Cell culture supernatant
Sample origin
Normoxia (20% O2)
Focus vesicles
small extracellular vesicle
Separation protocol
Separation protocol
(Differential) (ultra)centrifugation
Protein markers
EV: Alix/ CD63/ Flotillin-1
non-EV: Calnexin Proteomics
yes
Show all info
Study aim
Function/Identification of content (omics approaches)
Sample
Species
Homo sapiens
Sample Type
Cell culture supernatant
EV-producing cells
MDAMB231
EV-harvesting Medium
Serum free medium
Cell viability (%)
96
Cell count
1.50E+08
Separation Method
(Differential) (ultra)centrifugation
dUC: centrifugation steps
Below or equal to 800 g
Between 800 g and 10,000 g Between 10,000 g and 50,000 g Equal to or above 150,000 g Pelleting performed
Yes
Pelleting: rotor type
Type 45 Ti
Pelleting: speed (g)
150,000
Wash: volume per pellet (ml)
4
Wash: time (min)
120
Wash: Rotor Type
Type 45 Ti
Wash: speed (g)
150,000
Characterization: Protein analysis
Protein Concentration Method
microBCA
Protein Yield (µg)
per milliliter of starting sample
Western Blot
Detected EV-associated proteins
Alix/ CD63/ Flotillin-1
Not detected contaminants
Calnexin
Proteomics database
PRIDE
Characterization: Lipid analysis
No
Characterization: Particle analysis
NTA
Report type
Modus
Reported size (nm)
136
EV concentration
Yes
Particle yield
as number of particles per milliliter of starting sample: 1.62E+12
EM
EM-type
Transmission-EM
Image type
Close-up, Wide-field
|
||||||||
EV220177 | 5/6 | Homo sapiens | MDAMB231 | (d)(U)C | Pachane BC | 2022 | 78% | |
Study summaryFull title
All authors
Pachane BC, Nunes ACC, Cataldi TR, Micocci KC, Moreira BC, Labate CA, Selistre-de-Araujo HS, Altei WF
Journal
Int J Mol Sci
Abstract
Hypoxia, a condition of low oxygenation frequently found in triple-negative breast tumors (TNBC), pr (show more...)
EV-METRIC
78% (97th percentile of all experiments on the same sample type)
Reported
Not reported Not applicable EV-enriched
proteins
Protein analysis: analysis of three or more EV-enriched proteins
non
EV-enriched protein
Protein analysis: assessment of a non-EV-enriched protein
qualitative
and quantitative analysis
Particle analysis: implementation of both qualitative and quantitative methods. For the quantitative method, the reporting of measured EV concentration is expected.
electron
microscopy images
Particle analysis: inclusion of a widefield and close-up electron microscopy image
density
gradient
Separation method: density gradient, at least as validation of results attributed to EVs
EV density
Separation method: reporting of obtained EV density
ultracentrifugation specifics
Separation method: reporting of g-forces, duration and rotor type of ultracentrifugation steps
antibody
specifics
Protein analysis: antibody clone/reference number and dilution
lysate
preparation
Protein analysis: lysis buffer composition
Study dataSample type
Cell culture supernatant
Sample origin
Hypoxia (1% O2)
Focus vesicles
medium extracellular vesicle
Separation protocol
Separation protocol
(Differential) (ultra)centrifugation
Protein markers
EV: Flotillin-1/ Alix/ CD63
non-EV: Calnexin Proteomics
no
Show all info
Study aim
Function/Identification of content (omics approaches)
Sample
Species
Homo sapiens
Sample Type
Cell culture supernatant
EV-producing cells
MDAMB231
EV-harvesting Medium
Serum free medium
Cell viability (%)
96
Cell count
1.50E+08
Separation Method
(Differential) (ultra)centrifugation
dUC: centrifugation steps
Below or equal to 800 g
Between 800 g and 10,000 g Between 10,000 g and 50,000 g Pelleting performed
Yes
Pelleting: rotor type
Type 45 Ti
Pelleting: speed (g)
10,000
Wash: volume per pellet (ml)
4
Wash: time (min)
30
Wash: Rotor Type
Type 45 Ti
Wash: speed (g)
10,000
Characterization: Protein analysis
Protein Concentration Method
microBCA
Protein Yield (µg)
per milliliter of starting sample
Western Blot
Detected EV-associated proteins
Flotillin-1/ CD63
Not detected EV-associated proteins
Alix
Not detected contaminants
Calnexin
Characterization: Lipid analysis
No
Characterization: Particle analysis
NTA
Report type
Modus
Reported size (nm)
243
EV concentration
Yes
Particle yield
as number of particles per milliliter of starting sample: 1.14E+12
EM
EM-type
Transmission-EM
Image type
Close-up, Wide-field
|
||||||||
EV220177 | 6/6 | Homo sapiens | MDAMB231 | (d)(U)C | Pachane BC | 2022 | 78% | |
Study summaryFull title
All authors
Pachane BC, Nunes ACC, Cataldi TR, Micocci KC, Moreira BC, Labate CA, Selistre-de-Araujo HS, Altei WF
Journal
Int J Mol Sci
Abstract
Hypoxia, a condition of low oxygenation frequently found in triple-negative breast tumors (TNBC), pr (show more...)
EV-METRIC
78% (97th percentile of all experiments on the same sample type)
Reported
Not reported Not applicable EV-enriched
proteins
Protein analysis: analysis of three or more EV-enriched proteins
non
EV-enriched protein
Protein analysis: assessment of a non-EV-enriched protein
qualitative
and quantitative analysis
Particle analysis: implementation of both qualitative and quantitative methods. For the quantitative method, the reporting of measured EV concentration is expected.
electron
microscopy images
Particle analysis: inclusion of a widefield and close-up electron microscopy image
density
gradient
Separation method: density gradient, at least as validation of results attributed to EVs
EV density
Separation method: reporting of obtained EV density
ultracentrifugation specifics
Separation method: reporting of g-forces, duration and rotor type of ultracentrifugation steps
antibody
specifics
Protein analysis: antibody clone/reference number and dilution
lysate
preparation
Protein analysis: lysis buffer composition
Study dataSample type
Cell culture supernatant
Sample origin
Hypoxia (1% O2)
Focus vesicles
small extracellular vesicle
Separation protocol
Separation protocol
(Differential) (ultra)centrifugation
Protein markers
EV: Flotillin-1/ Alix/ CD63
non-EV: Calnexin Proteomics
yes
Show all info
Study aim
Function/Identification of content (omics approaches)
Sample
Species
Homo sapiens
Sample Type
Cell culture supernatant
EV-producing cells
MDAMB231
EV-harvesting Medium
Serum free medium
Cell viability (%)
96
Cell count
1.50E+08
Separation Method
(Differential) (ultra)centrifugation
dUC: centrifugation steps
Below or equal to 800 g
Between 800 g and 10,000 g Between 10,000 g and 50,000 g Equal to or above 150,000 g Pelleting performed
Yes
Pelleting: rotor type
Type 45 Ti
Pelleting: speed (g)
150,000
Wash: volume per pellet (ml)
4
Wash: time (min)
120
Wash: Rotor Type
Type 45 Ti
Wash: speed (g)
150,000
Characterization: Protein analysis
Protein Concentration Method
microBCA
Protein Yield (µg)
per milliliter of starting sample
Western Blot
Detected EV-associated proteins
Flotillin-1/ CD63
Not detected EV-associated proteins
Alix
Not detected contaminants
Calnexin
Proteomics database
PRIDE
Characterization: Lipid analysis
No
Characterization: Particle analysis
NTA
Report type
Modus
Reported size (nm)
150
EV concentration
Yes
Particle yield
as number of particles per milliliter of starting sample: 2.03E+12
EM
EM-type
Transmission-EM
Image type
Close-up, Wide-field
|
||||||||
EV220177 | 1/6 | Homo sapiens | MDAMB231 | (d)(U)C | Pachane BC | 2022 | 50% | |
Study summaryFull title
All authors
Pachane BC, Nunes ACC, Cataldi TR, Micocci KC, Moreira BC, Labate CA, Selistre-de-Araujo HS, Altei WF
Journal
Int J Mol Sci
Abstract
Hypoxia, a condition of low oxygenation frequently found in triple-negative breast tumors (TNBC), pr (show more...)
EV-METRIC
50% (87th percentile of all experiments on the same sample type)
Reported
Not reported Not applicable EV-enriched
proteins
Protein analysis: analysis of three or more EV-enriched proteins
non
EV-enriched protein
Protein analysis: assessment of a non-EV-enriched protein
qualitative
and quantitative analysis
Particle analysis: implementation of both qualitative and quantitative methods. For the quantitative method, the reporting of measured EV concentration is expected.
electron
microscopy images
Particle analysis: inclusion of a widefield and close-up electron microscopy image
density
gradient
Separation method: density gradient, at least as validation of results attributed to EVs
EV density
Separation method: reporting of obtained EV density
ultracentrifugation specifics
Separation method: reporting of g-forces, duration and rotor type of ultracentrifugation steps
antibody
specifics
Protein analysis: antibody clone/reference number and dilution
lysate
preparation
Protein analysis: lysis buffer composition
Study dataSample type
Cell culture supernatant
Sample origin
Normoxia (20% O2)
Focus vesicles
large extracellular vesicle
Separation protocol
Separation protocol
(Differential) (ultra)centrifugation
Protein markers
EV: Alix/ CD63/ Flotillin-1
non-EV: Calnexin Proteomics
no
Show all info
Study aim
Function/Identification of content (omics approaches)
Sample
Species
Homo sapiens
Sample Type
Cell culture supernatant
EV-producing cells
MDAMB231
EV-harvesting Medium
Serum free medium
Cell viability (%)
96
Cell count
1.50E+08
Separation Method
(Differential) (ultra)centrifugation
dUC: centrifugation steps
Below or equal to 800 g
Between 800 g and 10,000 g Pelleting performed
Yes
Pelleting: rotor type
F-35-6-30
Pelleting: speed (g)
2,000
Wash: volume per pellet (ml)
2
Wash: time (min)
30
Wash: Rotor Type
F-35-6-30
Wash: speed (g)
2,000
Characterization: Protein analysis
Protein Concentration Method
Not determined
Western Blot
Detected EV-associated proteins
Alix/ CD63/ Flotillin-1
Detected contaminants
Calnexin
Characterization: Lipid analysis
No
Characterization: Particle analysis
None
|
||||||||
EV220177 | 4/6 | Homo sapiens | MDAMB231 | (d)(U)C | Pachane BC | 2022 | 50% | |
Study summaryFull title
All authors
Pachane BC, Nunes ACC, Cataldi TR, Micocci KC, Moreira BC, Labate CA, Selistre-de-Araujo HS, Altei WF
Journal
Int J Mol Sci
Abstract
Hypoxia, a condition of low oxygenation frequently found in triple-negative breast tumors (TNBC), pr (show more...)
EV-METRIC
50% (87th percentile of all experiments on the same sample type)
Reported
Not reported Not applicable EV-enriched
proteins
Protein analysis: analysis of three or more EV-enriched proteins
non
EV-enriched protein
Protein analysis: assessment of a non-EV-enriched protein
qualitative
and quantitative analysis
Particle analysis: implementation of both qualitative and quantitative methods. For the quantitative method, the reporting of measured EV concentration is expected.
electron
microscopy images
Particle analysis: inclusion of a widefield and close-up electron microscopy image
density
gradient
Separation method: density gradient, at least as validation of results attributed to EVs
EV density
Separation method: reporting of obtained EV density
ultracentrifugation specifics
Separation method: reporting of g-forces, duration and rotor type of ultracentrifugation steps
antibody
specifics
Protein analysis: antibody clone/reference number and dilution
lysate
preparation
Protein analysis: lysis buffer composition
Study dataSample type
Cell culture supernatant
Sample origin
Hypoxia (1% O2)
Focus vesicles
large extracellular vesicle
Separation protocol
Separation protocol
(Differential) (ultra)centrifugation
Protein markers
EV: Flotillin-1/ Alix/ CD63
non-EV: Calnexin Proteomics
no
Show all info
Study aim
Function/Identification of content (omics approaches)
Sample
Species
Homo sapiens
Sample Type
Cell culture supernatant
EV-producing cells
MDAMB231
EV-harvesting Medium
Serum free medium
Cell viability (%)
96
Cell count
1.50E+08
Separation Method
(Differential) (ultra)centrifugation
dUC: centrifugation steps
Below or equal to 800 g
Between 800 g and 10,000 g Pelleting performed
Yes
Pelleting: rotor type
F-35-6-30
Pelleting: speed (g)
2,000
Wash: volume per pellet (ml)
2
Wash: time (min)
30
Wash: Rotor Type
F-35-6-30
Wash: speed (g)
2,000
Characterization: Protein analysis
Protein Concentration Method
Not determined
Protein Yield (µg)
per milliliter of starting sample
Western Blot
Detected EV-associated proteins
Flotillin-1/ CD63
Not detected EV-associated proteins
Alix
Detected contaminants
Calnexin
Characterization: Lipid analysis
No
Characterization: Particle analysis
None
|
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1 - 6 of 6 |
EV-TRACK ID | EV220177 | |||||
---|---|---|---|---|---|---|
species | Homo sapiens | |||||
sample type | Cell culture | |||||
cell type | MDAMB231 | |||||
condition | Normoxia (20% O2) | Normoxia (20% O2) | Hypoxia (1% O2) | Hypoxia (1% O2) | Normoxia (20% O2) | Hypoxia (1% O2) |
separation protocol | dUC | dUC | dUC | dUC | dUC | dUC |
vesicle related term | medium EV | small EV | medium EV | small EV | large EV | large EV |
Exp. nr. | 2 | 3 | 5 | 6 | 1 | 4 |
EV-METRIC % | 78 | 78 | 78 | 78 | 50 | 50 |